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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
84
ATAC-seq
74
total RNA-seq
58
ChIP-seq
6
snATAC-seq
4
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
90
DNA accessibility
58
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
32
histone
32
histone modification
19
broad histone mark
15
control
13
narrow histone mark
11
transcription factor
1
RNA binding protein
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
8
December, 2019
8
January, 2018
7
August, 2020
6
November, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
123
tsv
118
bed narrowPeak
64
bam
64
xls
61
bigWig
57
txt
38
tagAlign
17
fastq
6
bigBed narrowPeak
5
bed bed3+
4
bed broadPeak
2
bedpe bed3+
2
hic
1
vcf
Organism
338
Homo sapiens
Biosample type
252
tissue
42
in vitro differentiated cells
41
cell line
4
primary cell
Organ
130
kidney
92
heart
35
liver
16
brain
8
embryo
7
pancreas
6
blood vessel
6
connective tissue
6
vasculature
4
epithelium
2
adipose tissue
2
artery
1
spleen
Project
339
AMP
Genome assembly (visualization)
119
GRCh38
73
hg19
Lab
171
AMP-T2D consortium
128
Katalin Susztak, Upenn
35
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
Audit category:
4
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
339 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 16 more…
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
9
18
2
1
1
H1-hESC
8
HEK293T
2
primary cell
hepatocyte
4
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