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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
DNase-seq
17
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
43
DNA accessibility
17
DNA binding
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
31
June, 2019
26
October, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
May, 2019
Available data
65
bam
43
bed narrowPeak
42
bigWig
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
35
bigBed narrowPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
72
Homo sapiens
Biosample type
72
tissue
Organ
722
pancreas
687
liver
595
connective tissue
458
adipose tissue
356
epithelium
303
kidney
292
heart
164
vasculature
160
blood vessel
121
artery
98
brain
75
bone element
72
limb
68
blood
68
bodily fluid
61
musculature of body
58
eye
21
embryo
20
lung
19
nerve
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
72
AMP
Genome assembly (visualization)
48
GRCh38
47
hg19
Lab
72
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
spleen
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
72 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
2
11
1
5
muscle of arm
17
muscle of leg
12
1
1
tibial artery
2
5
1
1
gastrocnemius medialis
1
4
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