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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
508
ChIP-seq
189
total RNA-seq
21
ATAC-seq
5
DNase-seq
4
Hi-C
4
pCHi-C
3
small RNA-seq
2
STARR-seq
2
WGBS
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
508
DNA binding
193
Transcription
26
DNA accessibility
4
3D chromatin structure
3
DNA methylation
1
DNA sequencing
Target of assay
334
transcription factor
97
control
82
recombinant protein
74
histone
74
histone modification
58
RNA binding protein
51
narrow histone mark
23
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
August, 2017
53
November, 2018
40
May, 2022
35
August, 2021
10
July, 2019
10
October, 2019
5
December, 2019
5
January, 2019
4
March, 2020
3
February, 2021
2
June, 2019
1
December, 2018
1
February, 2020
Available data
654
bam
604
bigWig
437
fastq
422
bed narrowPeak
352
bigBed narrowPeak
175
tsv
66
tagAlign
63
bed broadPeak
63
bigBed broadPeak
10
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
741
Homo sapiens
Biosample type
401
cell line
312
tissue
15
in vitro differentiated cells
13
primary cell
Organ
736
liver
677
pancreas
540
connective tissue
433
adipose tissue
404
epithelium
387
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
75
bone element
69
blood
69
bodily fluid
61
eye
61
musculature of body
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
741
AMP
Genome assembly (visualization)
604
hg19
511
GRCh38
Lab
670
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2017
BIOSAMPLE
ASSAY
741 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
WGBS
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
2
1
1
tissue
liver
97
167
20
2
1
1
1
1
right lobe of liver
10
3
1
2
1
islet of Langerhans
4
ovary
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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