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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
282
total RNA-seq
153
ChIP-seq
62
ATAC-seq
11
snATAC-seq
10
single cell RNA-seq
8
DNase-seq
4
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
294
Transcription
153
DNA binding
83
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
103
histone
103
histone modification
56
broad histone mark
47
narrow histone mark
35
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
159
August, 2017
122
July, 2018
51
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
18
October, 2019
11
September, 2018
9
March, 2020
8
April, 2018
8
January, 2021
7
November, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
470
bam
408
bigWig
278
tsv
239
fastq
141
bed narrowPeak
69
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
16
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
hic
2
bedpe bed3+
1
bedpe
1
hdf5
Organism
538
Homo sapiens
Biosample type
503
tissue
27
primary cell
15
cell line
Organ
860
pancreas
755
liver
660
connective tissue
489
adipose tissue
epithelium
295
heart
283
brain
229
vasculature
224
blood vessel
201
kidney
139
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
515
AMP
30
T1D
Genome assembly (visualization)
448
hg19
421
GRCh38
Lab
484
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
1
audit script error
Audit category:
33
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2021
October, 2022
organ_slims!
epithelium
BIOSAMPLE
ASSAY
545 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
DNase-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
277
50
58
7
6
1
2
4
1
1
body of pancreas
3
35
4
4
2
2
pancreas
2
16
4
2
1
2
1
1
1
endocrine pancreas
16
primary cell
pancreatic endocrine cell
23
pancreatic stellate cell
4
cell line
Panc1
13
1
1
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