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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
5
RRBS
5
total RNA-seq
2
Hi-C
2
small RNA-seq
1
ATAC-seq
1
DNase-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
24
DNA binding
8
Transcription
5
DNA methylation
3
DNA accessibility
2
3D chromatin structure
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
4
control
Date released
26
August, 2017
5
July, 2019
5
March, 2020
3
June, 2019
2
May, 2022
1
February, 2020
1
January, 2018
Available data
22
bigWig
15
bed narrowPeak
15
tagAlign
14
bed broadPeak
9
bam
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
bedpe bed3+
2
bigBed narrowPeak
2
fastq
2
hic
1
bigBed broadPeak
1
txt
Organism
43
Homo sapiens
Biosample type
37
tissue
6
primary cell
Organ
863
pancreas
755
liver
660
connective tissue
489
adipose tissue
429
epithelium
295
heart
283
brain
229
vasculature
blood vessel
201
kidney
139
artery
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
43
AMP
Genome assembly (visualization)
28
hg19
8
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2021
organ_slims!
blood vessel
limb
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
RRBS
total RNA-seq
Hi-C
small RNA-seq
ATAC-seq
DNase-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle cell
2
1
1
skeletal muscle satellite cell
1
1
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