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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
35
DNase-seq
9
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
73
DNA binding
44
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
55
histone
55
histone modification
38
broad histone mark
18
control
17
narrow histone mark
Date released
69
October, 2019
31
June, 2019
November, 2018
December, 2018
7
January, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
1
October, 2017
Available data
121
bam
98
bed narrowPeak
97
bigWig
89
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
8
fastq
8
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
130
Homo sapiens
Biosample type
130
tissue
Organ
858
pancreas
736
liver
664
connective tissue
489
adipose tissue
433
epithelium
387
heart
331
kidney
281
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
61
eye
43
nerve
31
embryo
27
blood
27
bodily fluid
22
vein
20
lung
18
ureter
16
skeleton
9
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
130
AMP
Genome assembly (visualization)
102
GRCh38
102
hg19
Lab
130
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
month_released!
December, 2018
November, 2018
BIOSAMPLE
ASSAY
130 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
12
1
muscle of arm
17
spleen
7
1
1
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