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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
32
DNase-seq
16
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
101
DNA binding
37
DNA accessibility
23
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
185
histone
185
histone modification
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
60
November, 2017
30
June, 2019
18
July, 2019
18
May, 2019
14
October, 2017
12
October, 2019
11
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
138
bam
116
bigWig
97
bed narrowPeak
94
bigBed narrowPeak
64
tagAlign
39
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
25
tsv
17
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
168
Homo sapiens
Biosample type
150
tissue
18
primary cell
Organ
798
pancreas
729
liver
636
connective tissue
478
adipose tissue
394
epithelium
heart
318
kidney
209
vasculature
205
blood vessel
168
brain
135
artery
106
limb
77
musculature of body
75
bone element
58
eye
41
blood
41
bodily fluid
35
nerve
25
embryo
20
lung
18
ureter
16
skeleton
16
spleen
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
168
AMP
Genome assembly (visualization)
110
GRCh38
72
hg19
Lab
168
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
3
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
month_released!
December, 2018
organ_slims!
heart
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
168 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
16
14
1
1
1
layer of hippocampus
15
caudate nucleus
10
1
1
temporal lobe
10
1
1
substantia nigra
10
1
+ See 29 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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