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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
8
total RNA-seq
1
GRO-seq
Assay category
9
DNA binding
8
Transcription
Target of assay
4
histone
4
histone modification
3
narrow histone mark
3
transcription factor
2
control
1
broad histone mark
Date released
February, 2018
9
December, 2017
8
August, 2021
1
January, 2018
Available data
17
bam
15
bigWig
10
fastq
8
tsv
6
bed narrowPeak
3
bed bed3+
Organism
18
Homo sapiens
Biosample type
10
in vitro differentiated cells
8
cell line
Organ
865
pancreas
790
liver
665
connective tissue
490
adipose tissue
433
epithelium
387
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
embryo
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
small intestine
1
spinal cord
Project
18
AMP
Genome assembly (visualization)
15
GRCh38
15
hg19
1
hg18
Lab
18
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
month_released!
February, 2018
organ_slims!
pituitary gland
small intestine
BIOSAMPLE
ASSAY
18 results
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Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
9
1
cell line
H1-hESC
8
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