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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
65
total RNA-seq
47
ATAC-seq
7
DNase-seq
6
single cell RNA-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
114
DNA binding
71
Transcription
54
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
78
histone
78
histone modification
52
broad histone mark
29
control
26
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
68
October, 2019
66
February, 2021
50
May, 2019
35
February, 2023
8
July, 2019
6
August, 2021
4
February, 2020
3
June, 2019
3
March, 2020
Available data
196
bam
158
bigWig
139
bed narrowPeak
88
bigBed narrowPeak
72
tsv
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
243
Homo sapiens
Biosample type
176
tissue
66
cell line
1
primary cell
Organ
865
pancreas
785
liver
665
connective tissue
490
adipose tissue
epithelium
387
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
61
eye
51
blood
51
bodily fluid
43
nerve
31
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
243
AMP
Genome assembly (visualization)
201
GRCh38
166
hg19
Lab
243
AMP-T2D consortium
audit.ERROR.category!
inconsistent ontology term
month_released!
January, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
243 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
5
1
36
2
tibial nerve
35
5
1
2
tibial artery
23
1
1
2
aorta
13
1
4
2
1
1
ascending aorta
16
2
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
smooth muscle cell of the coronary artery
1
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