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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
417
total RNA-seq
98
ChIP-seq
34
ATAC-seq
8
WGBS
7
DNase-seq
5
pCHi-C
3
small RNA-seq
1
RNA microarray
1
RRBS
Assay category
420
Transcription
98
DNA binding
41
DNA accessibility
9
DNA methylation
Target of assay
41
histone
41
histone modification
33
control
24
broad histone mark
24
transcription factor
17
narrow histone mark
6
RNA binding protein
3
other context
3
other post-translational modification
Date released
386
February, 2021
57
August, 2017
32
February, 2023
23
October, 2018
22
October, 2019
13
July, 2019
10
November, 2018
8
June, 2019
7
December, 2018
7
January, 2019
3
February, 2020
March, 2020
2
October, 2017
1
August, 2018
1
August, 2021
1
January, 2018
1
May, 2023
Available data
472
bam
447
bigWig
405
tsv
68
fastq
59
bed narrowPeak
29
bigBed narrowPeak
11
bed bed3+
8
bed broadPeak
8
tagAlign
7
bigBed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
1
bedpe bed3+
Organism
573
Homo sapiens
Biosample type
566
tissue
7
primary cell
1
in vitro differentiated cells
Organ
856
pancreas
787
liver
664
connective tissue
489
adipose tissue
432
epithelium
380
heart
331
kidney
281
brain
231
vasculature
226
blood vessel
141
artery
121
limb
82
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
574
AMP
Genome assembly (visualization)
473
hg19
445
GRCh38
Lab
574
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
12
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
month_released!
March, 2020
BIOSAMPLE
ASSAY
574 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
small RNA-seq
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
subcutaneous abdominal adipose tissue
36
3
spleen
20
1
2
1
subcutaneous adipose tissue
7
12
1
1
1
islet of Langerhans
14
2
1
4
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primary cell
retinal pigment epithelial cell
3
1
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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