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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
20
DNase-seq
5
total RNA-seq
1
ATAC-seq
Assay category
35
DNA binding
21
DNA accessibility
5
Transcription
Target of assay
24
histone
24
histone modification
16
broad histone mark
11
control
8
narrow histone mark
Date released
42
October, 2019
18
June, 2019
1
February, 2020
Available data
60
bam
49
bigWig
45
bed narrowPeak
44
bigBed narrowPeak
20
bed bed3+
20
bed broadPeak
20
bigBed broadPeak
5
tsv
Organism
61
Homo sapiens
Biosample type
61
tissue
Organ
826
pancreas
790
liver
665
connective tissue
490
adipose tissue
433
epithelium
387
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
61
AMP
Genome assembly (visualization)
49
GRCh38
49
hg19
Lab
61
AMP-T2D consortium
audit.ERROR.category!
inconsistent ontology term
month_released!
November, 2019
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
tissue
tibial nerve
35
2
5
1
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
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