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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
DNase-seq
25
ChIP-seq
15
total RNA-seq
6
ATAC-seq
4
Hi-C
1
GRO-seq
1
WGBS
Assay category
37
DNA accessibility
25
DNA binding
15
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
6
control
3
transcription factor
Date released
October, 2019
31
June, 2019
13
February, 2018
9
December, 2017
8
August, 2021
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
January, 2018
Available data
75
bam
63
bigWig
55
bed narrowPeak
37
bigBed narrowPeak
34
bed bed3+
31
bed broadPeak
31
bigBed broadPeak
23
fastq
15
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
83
Homo sapiens
Biosample type
52
tissue
23
in vitro differentiated cells
8
cell line
Organ
847
pancreas
784
liver
661
connective tissue
489
adipose tissue
399
epithelium
379
heart
314
kidney
199
brain
188
vasculature
183
blood vessel
115
artery
87
musculature of body
75
bone element
69
blood
69
bodily fluid
52
limb
40
eye
31
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
vein
Project
83
AMP
Genome assembly (visualization)
68
GRCh38
68
hg19
1
hg18
Lab
83
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
month_released!
October, 2019
BIOSAMPLE
ASSAY
83 results
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DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
GRO-seq
WGBS
tissue
muscle of leg
12
7
1
muscle of arm
17
gastrocnemius medialis
1
4
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 8 more…
in vitro differentiated cells
pancreatic endoderm
18
4
1
cell line
H1-hESC
8
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