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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
total RNA-seq
130
ChIP-seq
100
ATAC-seq
1
Hi-C
1
pCHi-C
Assay category
186
Transcription
130
DNA binding
100
DNA accessibility
1
3D chromatin structure
Target of assay
87
histone
87
histone modification
50
narrow histone mark
37
broad histone mark
37
control
6
transcription factor
4
RNA binding protein
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
355
bam
317
bigWig
185
tsv
92
bed narrowPeak
64
bigBed narrowPeak
50
tagAlign
1
bed broadPeak
1
bedpe
1
fastq
1
hic
Organism
418
Homo sapiens
Biosample type
278
tissue
139
primary cell
1
cell line
Organ
194
liver
57
heart
23
kidney
5
pancreas
Project
377
AMP
41
T1D
Genome assembly (visualization)
320
hg19
269
GRCh38
Lab
372
AMP-T2D consortium
41
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
418 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
tissue
liver
143
50
heart left ventricle
35
kidney
23
heart right ventricle
13
heart
9
+ See 1 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 22 more…
cell line
HepG2
1
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