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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
6
WGBS
1
ATAC-seq
1
DNase-seq
Assay category
48
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
69
histone
histone modification
40
broad histone mark
34
transcription factor
28
narrow histone mark
14
control
4
RNA binding protein
2
chromatin remodeller
Date released
455
February, 2021
56
August, 2017
23
October, 2018
17
July, 2019
10
February, 2023
6
June, 2019
6
November, 2020
5
August, 2021
3
February, 2020
3
October, 2019
2
April, 2018
2
July, 2018
2
May, 2021
1
August, 2018
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
October, 2017
Available data
46
fastq
45
bam
38
bigWig
19
bed narrowPeak
11
bed bed3+
3
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
56
Homo sapiens
Biosample type
31
in vitro differentiated cells
25
tissue
Organ
122
pancreas
56
connective tissue
25
adipose tissue
21
liver
15
epithelium
7
musculature of body
0
spinal cord
Project
56
AMP
Genome assembly (visualization)
39
GRCh38
37
hg19
Lab
56
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
56 results
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Clear Filters
ChIP-seq
WGBS
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
30
1
tissue
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
adipose tissue
1
3
subcutaneous adipose tissue
1
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