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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
24
total RNA-seq
5
GRO-seq
3
ATAC-seq
Assay category
90
DNA binding
24
Transcription
3
DNA accessibility
Target of assay
42
transcription factor
29
histone
29
histone modification
19
control
15
broad histone mark
14
narrow histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
95
fastq
90
bam
78
bigWig
70
bed narrowPeak
50
bigBed narrowPeak
24
tsv
15
bed bed3+
Organism
122
Homo sapiens
Biosample type
74
tissue
43
in vitro differentiated cells
4
stem cell
1
cell line
Organ
64
liver
15
epithelium
11
brain
10
embryo
3
adipose tissue
3
blood vessel
3
connective tissue
3
heart
3
limb
3
musculature of body
3
vasculature
2
artery
1
blood
1
bodily fluid
1
eye
1
nerve
1
pancreas
1
spinal cord
Project
122
AMP
Genome assembly (visualization)
78
hg19
75
GRCh38
5
hg18
Lab
122
AMP-T2D consortium
Audit category:
27
inconsistent control
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
10
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
month_released!
October, 2018
BIOSAMPLE
ASSAY
122 results
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Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
ATAC-seq
tissue
liver
38
right lobe of liver
10
1
Ammon's horn
1
C1 segment of cervical spinal cord
1
adipose tissue
1
+ See 22 more…
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
1
Posterior foregut
5
1
definitive endodermal cell
5
1
primitive gut cell
5
1
stem cell
hESC
3
1
cell line
GM12878
1
See all biosamples
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