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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
6
DNase-seq
6
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
48
DNA binding
7
DNA accessibility
6
DNA methylation
1
Transcription
Target of assay
24
transcription factor
12
control
12
histone
12
histone modification
7
narrow histone mark
5
broad histone mark
3
other context
3
other post-translational modification
2
RNA binding protein
2
chromatin remodeller
Date released
584
February, 2021
357
August, 2017
309
May, 2021
285
October, 2019
281
August, 2021
194
February, 2023
190
June, 2019
162
July, 2018
160
May, 2022
139
May, 2020
117
May, 2019
96
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
44
March, 2020
40
May, 2024
39
February, 2018
39
November, 2019
35
November, 2018
34
December, 2018
27
December, 2017
25
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
December, 2019
2
June, 2018
1
August, 2022
Available data
62
fastq
61
bam
48
bigWig
42
bed narrowPeak
22
bigBed narrowPeak
21
bed bed3+
6
bed bedMethyl
6
bed broadPeak
6
bigBed bedMethyl
6
bigBed broadPeak
1
csv
Organism
62
Homo sapiens
Biosample type
24
in vitro differentiated cells
19
tissue
15
cell line
3
stem cell
1
primary cell
Organ
liver
15
blood
15
bodily fluid
15
epithelium
9
embryo
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
62
AMP
Genome assembly (visualization)
52
GRCh38
47
hg19
Lab
62
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
10
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
organ_slims!
liver
BIOSAMPLE
ASSAY
62 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
in vitro differentiated cells
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
tissue
spleen
6
1
2
body of pancreas
2
2
pancreas
2
1
brain
2
omental fat pad
1
cell line
GM12878
15
stem cell
hESC
3
primary cell
pancreatic cell
1
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