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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
snATAC-seq
15
ATAC-seq
15
ChIP-seq
5
GRO-seq
1
Hi-C
Assay category
31
DNA accessibility
15
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
10
broad histone mark
3
control
2
narrow histone mark
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
23
fastq
22
bigWig
16
bam
14
tagAlign
12
bed narrowPeak
6
bigBed narrowPeak
5
bed broadPeak
1
bedpe
1
hic
Organism
52
Homo sapiens
Biosample type
38
tissue
8
primary cell
4
in vitro differentiated cells
1
cell line
1
stem cell
Organ
18
pancreas
16
brain
9
blood
9
bodily fluid
2
adipose tissue
2
connective tissue
1
embryo
1
musculature of body
1
spleen
Project
36
AMP
16
T1D
Genome assembly (visualization)
19
hg19
16
GRCh38
5
hg18
Lab
30
AMP-T2D consortium
16
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
52 results
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Clear Filters
snATAC-seq
ATAC-seq
ChIP-seq
GRO-seq
Hi-C
tissue
brain
15
islet of Langerhans
4
5
1
body of pancreas
4
pancreas
4
adipose tissue
1
+ See 4 more…
primary cell
peripheral blood mononuclear cell
8
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
cell line
GM12878
1
stem cell
hESC
1
See all biosamples
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