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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
5
total RNA-seq
3
Hi-C
1
MPRA
Assay category
25
DNA binding
5
Transcription
3
3D chromatin structure
Target of assay
14
transcription factor
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
4
control
3
narrow histone mark
Date released
587
February, 2021
411
August, 2017
333
May, 2020
316
August, 2021
315
November, 2017
309
May, 2021
207
October, 2019
200
May, 2022
193
February, 2023
162
July, 2018
162
June, 2019
90
December, 2017
89
May, 2019
88
July, 2019
86
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
45
March, 2020
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
April, 2020
16
January, 2021
15
May, 2023
13
February, 2020
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
7
October, 2017
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
30
bam
30
fastq
26
bigWig
21
bed narrowPeak
21
bigBed narrowPeak
5
tsv
3
bedpe bed3+
3
cool
3
hic
1
txt
Organism
33
Homo sapiens
Biosample type
24
cell line
7
tissue
3
primary cell
Organ
18
blood
18
bodily fluid
7
spleen
5
liver
3
epithelium
3
pancreas
Project
31
AMP
3
HPAP
Genome assembly (visualization)
29
hg19
26
GRCh38
Lab
31
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
audit.ERROR.category!
inconsistent ontology term
month_released!
April, 2020
organ_slims!
brain
BIOSAMPLE
ASSAY
34 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
MPRA
cell line
GM12878
18
HepG2
5
MIN6
1
tissue
spleen
7
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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