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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
total RNA-seq
173
ATAC-seq
50
ChIP-seq
41
WGBS
34
single cell RNA-seq
22
snATAC-seq
1
pCHi-C
Assay category
246
Transcription
195
DNA accessibility
50
DNA binding
41
DNA methylation
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
299
bam
272
bigWig
185
tsv
134
zippedFastqFolder
65
bed narrowPeak
50
tagAlign
24
fastq
7
txt
1
bed bed3+
Organism
533
Homo sapiens
Biosample type
273
primary cell
259
tissue
1
cell line
Organ
234
liver
104
pancreas
80
epithelium
2
musculature of body
Project
358
AMP
134
HPAP
41
T1D
Genome assembly (visualization)
291
hg19
203
GRCh38
Lab
294
AMP-T2D consortium
134
Klaus Kaestner, Upenn
65
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
Audit category:
inconsistent ontology term
1
audit script error
audit.ERROR.category!
inconsistent ontology term
month_released!
April, 2019
BIOSAMPLE
ASSAY
533 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
WGBS
single cell RNA-seq
snATAC-seq
pCHi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
+ See 26 more…
tissue
liver
163
20
50
islet of Langerhans
6
18
skeletal muscle tissue
1
1
cell line
HepG2
1
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