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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
total RNA-seq
104
ATAC-seq
65
ChIP-seq
1
pCHi-C
Assay category
186
Transcription
104
DNA accessibility
65
DNA binding
Target of assay
39
histone
39
histone modification
29
narrow histone mark
26
control
10
broad histone mark
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
309
May, 2021
308
August, 2021
291
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
88
November, 2018
81
December, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
November, 2019
35
December, 2018
30
January, 2019
26
February, 2018
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
290
bam
266
bigWig
185
tsv
64
tagAlign
39
bed narrowPeak
17
fastq
6
bigBed narrowPeak
4
bed broadPeak
Organism
356
Homo sapiens
Biosample type
216
tissue
139
primary cell
1
cell line
Organ
194
liver
16
brain
5
pancreas
1
adipose tissue
1
connective tissue
1
spleen
Project
315
AMP
41
T1D
Genome assembly (visualization)
265
hg19
217
GRCh38
Lab
314
AMP-T2D consortium
41
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
Audit category:
4
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
organ_slims!
embryo
BIOSAMPLE
ASSAY
356 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
143
50
brain
15
body of pancreas
4
cerebellum (Hemisphere)
1
islet of Langerhans
1
+ See 2 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 22 more…
cell line
HepG2
1
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