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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
total RNA-seq
57
ATAC-seq
38
ChIP-seq
4
DNase-seq
3
pCHi-C
2
single cell RNA-seq
Assay category
120
Transcription
61
DNA accessibility
38
DNA binding
Target of assay
24
histone
24
histone modification
14
broad histone mark
10
narrow histone mark
9
control
5
transcription factor
1
RNA binding protein
Date released
132
February, 2021
43
February, 2023
30
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
2
March, 2020
1
May, 2021
Available data
168
bam
143
bigWig
118
tsv
82
bed narrowPeak
25
bigBed narrowPeak
6
tagAlign
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
txt
Organism
222
Homo sapiens
Biosample type
153
tissue
66
cell line
3
primary cell
Organ
865
pancreas
790
liver
665
connective tissue
490
adipose tissue
433
epithelium
387
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
221
AMP
1
T1D
Genome assembly (visualization)
194
GRCh38
163
hg19
Lab
221
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
222 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
pCHi-C
single cell RNA-seq
tissue
bone tissue
58
coronary artery
1
36
5
2
tibial artery
1
1
23
2
islet of Langerhans
4
acetabular part of hip bone
1
1
+ See 14 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
megakaryocyte
1
smooth muscle cell of the coronary artery
1
See all biosamples
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