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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
total RNA-seq
8
ChIP-seq
1
GRO-seq
Assay category
12
Transcription
8
DNA binding
Target of assay
10
histone
histone modification
6
narrow histone mark
5
control
4
broad histone mark
3
transcription factor
Date released
8
August, 2021
7
February, 2018
5
December, 2017
1
January, 2018
Available data
20
bam
16
bigWig
13
fastq
12
tsv
3
bed narrowPeak
1
bed bed3+
Organism
21
Homo sapiens
Biosample type
13
in vitro differentiated cells
8
cell line
Organ
726
pancreas
687
liver
595
connective tissue
458
adipose tissue
356
epithelium
303
kidney
292
heart
164
vasculature
160
blood vessel
121
artery
98
brain
75
bone element
72
limb
68
blood
68
bodily fluid
61
musculature of body
58
eye
21
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
21
AMP
Genome assembly (visualization)
16
GRCh38
16
hg19
1
hg18
Lab
21
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
organ_slims!
ovary
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
21 results
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Clear Filters
total RNA-seq
ChIP-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
4
8
1
cell line
H1-hESC
8
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