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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
DNase-seq
43
ChIP-seq
7
ATAC-seq
6
total RNA-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
58
DNA accessibility
43
DNA binding
6
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
12
control
11
narrow histone mark
Date released
49
June, 2019
43
October, 2019
7
May, 2019
6
February, 2021
5
July, 2019
2
February, 2020
1
March, 2020
Available data
105
bam
88
bed narrowPeak
87
bigWig
81
bigBed narrowPeak
51
bed bed3+
51
bed broadPeak
51
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
113
Homo sapiens
Biosample type
113
tissue
Organ
865
pancreas
790
liver
665
connective tissue
490
adipose tissue
433
epithelium
387
heart
331
kidney
283
brain
235
vasculature
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
113
AMP
Genome assembly (visualization)
92
GRCh38
92
hg19
Lab
113
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
113 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
2
35
1
5
muscle of leg
12
7
1
muscle of arm
17
renal pelvis
10
gastrocnemius medialis
1
4
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