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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
55
DNase-seq
8
ATAC-seq
7
total RNA-seq
6
Hi-C
1
FAIRE-seq
1
WGBS
1
pCHi-C
Assay category
83
DNA binding
64
DNA accessibility
7
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
64
histone
64
histone modification
43
broad histone mark
21
narrow histone mark
19
control
Date released
90
October, 2019
49
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
2
March, 2020
Available data
151
bam
123
bigWig
122
bed narrowPeak
114
bigBed narrowPeak
57
bed broadPeak
57
bigBed broadPeak
55
bed bed3+
8
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
162
Homo sapiens
Biosample type
140
tissue
22
primary cell
Organ
865
pancreas
790
liver
665
connective tissue
490
adipose tissue
433
epithelium
387
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
162
AMP
Genome assembly (visualization)
130
hg19
125
GRCh38
Lab
162
AMP-T2D consortium
Audit category:
1
audit script error
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
162 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
FAIRE-seq
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
12
1
muscle of arm
17
renal pelvis
10
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primary cell
endothelial cell of umbilical vein
17
2
2
1
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