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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
34
DNase-seq
8
ATAC-seq
6
total RNA-seq
4
Hi-C
3
WGBS
1
pCHi-C
Assay category
63
DNA binding
42
DNA accessibility
6
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
37
histone
37
histone modification
24
broad histone mark
20
control
13
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
43
October, 2019
31
June, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
May, 2019
6
February, 2021
5
July, 2019
2
February, 2020
1
March, 2020
1
October, 2017
Available data
111
bam
85
bigWig
84
bed narrowPeak
76
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
24
fastq
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
119
Homo sapiens
Biosample type
119
tissue
Organ
865
pancreas
790
liver
665
connective tissue
490
adipose tissue
433
epithelium
387
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
119
AMP
Genome assembly (visualization)
90
GRCh38
88
hg19
Lab
119
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
organ_slims!
artery
BIOSAMPLE
ASSAY
119 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
5
spleen
20
1
1
2
1
muscle of leg
7
12
1
muscle of arm
17
gastrocnemius medialis
1
4
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