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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
6
Hi-C
6
total RNA-seq
5
ChIP-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
9
Transcription
6
3D chromatin structure
6
DNA methylation
5
DNA binding
Target of assay
histone
26
histone modification
16
broad histone mark
10
narrow histone mark
5
control
Date released
33
June, 2019
10
July, 2019
7
August, 2017
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
May, 2019
Available data
41
bam
40
bigWig
33
bed bed3+
32
bed broadPeak
32
bed narrowPeak
32
bigBed broadPeak
32
bigBed narrowPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
1
txt
Organism
61
Homo sapiens
Biosample type
56
tissue
5
primary cell
Organ
726
pancreas
688
liver
595
connective tissue
458
adipose tissue
356
epithelium
303
kidney
292
heart
164
vasculature
160
blood vessel
121
artery
98
brain
75
bone element
72
limb
68
blood
68
bodily fluid
61
musculature of body
58
eye
21
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
pericardium
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
61
AMP
Genome assembly (visualization)
45
hg19
39
GRCh38
Lab
61
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
audit.ERROR.category!
inconsistent ontology term
organ_slims!
esophagus
pericardium
target.investigated_as!
histone
BIOSAMPLE
ASSAY
61 results
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DNase-seq
Hi-C
total RNA-seq
ChIP-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
12
1
1
skeletal muscle tissue
1
3
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
1
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