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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
51
total RNA-seq
17
pCHi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
84
DNA binding
55
Transcription
1
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
152
May, 2021
54
May, 2022
47
September, 2023
45
May, 2020
44
February, 2023
40
September, 2020
39
February, 2021
19
April, 2020
8
January, 2021
5
March, 2023
Available data
135
bam
135
bigWig
84
bed narrowPeak
84
tagAlign
51
tsv
1
hic
Organism
153
Homo sapiens
Biosample type
152
primary cell
2
cell line
2
stem cell
1
tissue
Organ
1
bone element
1
bone marrow
1
connective tissue
1
epithelium
pancreas
1
thymus
Project
AMP
152
T1D
4
community
1
ITG
Genome assembly (visualization)
136
GRCh38
135
hg19
Lab
152
Kyle Gaulton, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
1
inconsistent ontology term
audit.ERROR.category!
inconsistent replicate
award.project!
AMP
organ_slims!
pancreas
BIOSAMPLE
ASSAY
157 results
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ChIP-seq
total RNA-seq
pCHi-C
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
84
51
1
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
tissue
thymus
1
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