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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
34
ChIP-seq
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
205
DNA accessibility
34
DNA binding
2
Transcription
Target of assay
17
histone
17
histone modification
13
transcription factor
9
narrow histone mark
8
broad histone mark
4
control
2
RNA binding protein
Date released
187
June, 2019
26
August, 2017
9
November, 2018
7
October, 2019
3
August, 2021
3
December, 2017
2
February, 2021
2
May, 2021
2
September, 2017
1
May, 2022
1
November, 2020
Available data
3100
bam
2910
bigWig
1684
bed narrowPeak
1469
tsv
1217
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
6
bed bed3
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
243
Homo sapiens
Biosample type
205
tissue
33
primary cell
in vitro differentiated cells
3
stem cell
2
cell line
Organ
78
kidney
36
limb
34
musculature of body
32
brain
30
heart
28
pancreas
19
epithelium
18
ureter
13
connective tissue
12
liver
11
vasculature
9
blood vessel
6
adipose tissue
4
artery
4
eye
2
nerve
2
vein
1
spleen
Project
243
AMP
Genome assembly (visualization)
238
GRCh38
220
hg19
Lab
241
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
14
missing controlled_by
Audit category:
2
inconsistent control read length
audit.ERROR.category!
inconsistent replicate
biosample_type!
in vitro differentiated cells
files.file_type!
hdf5
BIOSAMPLE
ASSAY
243 results
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Clear Filters
DNase-seq
ChIP-seq
pCHi-C
total RNA-seq
snATAC-seq
tissue
islet of Langerhans
21
heart
18
muscle of arm
17
brain
14
kidney
13
+ See 42 more…
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
+ See 18 more…
stem cell
hESC
3
cell line
HepG2
1
Panc1
1
See all biosamples
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