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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
57
ChIP-seq
2
ATAC-seq
Assay category
207
DNA accessibility
57
DNA binding
Target of assay
49
transcription factor
9
RNA binding protein
8
histone
8
histone modification
5
chromatin remodeller
4
broad histone mark
4
narrow histone mark
1
other context
1
other post-translational modification
Date released
187
June, 2019
53
November, 2017
9
November, 2018
9
October, 2019
3
August, 2017
1
March, 2019
1
November, 2020
1
October, 2017
Available data
3100
bam
2910
bigWig
1684
bed narrowPeak
1468
tsv
1217
fastq
1025
bigBed narrowPeak
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
6
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
264
Homo sapiens
Biosample type
178
tissue
48
cell line
38
primary cell
in vitro differentiated cells
Organ
78
kidney
52
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
pancreas
8
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
264
AMP
Genome assembly (visualization)
247
GRCh38
240
hg19
Lab
262
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
audit.ERROR.category!
inconsistent replicate
biosample_type!
in vitro differentiated cells
files.file_type!
tagAlign
organ_slims!
thymus
BIOSAMPLE
ASSAY
264 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 40 more…
cell line
HepG2
47
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 18 more…
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