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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
93
single cell RNA-seq
62
total RNA-seq
43
ATAC-seq
3
Hi-C
3
pCHi-C
Assay category
155
Transcription
129
DNA binding
43
DNA accessibility
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
18
control
16
transcription factor
10
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
40
May, 2024
36
February, 2023
21
May, 2019
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
3
May, 2021
Available data
197
bigWig
182
bam
181
bed narrowPeak
157
tsv
88
bigBed narrowPeak
27
bed bed3+
bed broadPeak
27
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
Organism
333
Homo sapiens
Biosample type
266
tissue
66
cell line
primary cell
1
in vitro differentiated cells
Organ
707
liver
631
connective tissue
573
pancreas
476
adipose tissue
333
heart
246
kidney
218
brain
187
blood vessel
187
vasculature
158
bone element
134
artery
118
epithelium
81
limb
61
blood
61
bodily fluid
53
eye
41
nerve
37
embryo
30
musculature of body
24
spleen
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
333
AMP
Genome assembly (visualization)
212
GRCh38
141
hg19
Lab
293
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
audit.ERROR.category!
inconsistent replicate
biosample_type!
primary cell
files.file_type!
bed broadPeak
month_released!
July, 2019
BIOSAMPLE
ASSAY
333 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
tissue
left cardiac atrium
40
18
heart left ventricle
35
18
1
1
1
coronary artery
5
1
35
heart right ventricle
13
17
1
1
1
right cardiac atrium
6
18
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
in vitro differentiated cells
cardiac fibroblast
1
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