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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
45
ATAC-seq
25
ChIP-seq
2
single cell RNA-seq
Assay category
56
Transcription
45
DNA accessibility
25
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
64
February, 2021
35
February, 2023
19
October, 2019
3
May, 2019
2
August, 2021
2
February, 2020
1
July, 2019
Available data
91
bam
83
bigWig
74
bed narrowPeak
56
tsv
25
bigBed narrowPeak
4
bed bed3+
bed broadPeak
4
bigBed broadPeak
4
tagAlign
Organism
126
Homo sapiens
Biosample type
64
cell line
62
tissue
primary cell
Organ
609
connective tissue
608
liver
538
pancreas
462
adipose tissue
335
heart
241
kidney
204
brain
176
blood vessel
176
vasculature
158
bone element
126
artery
109
epithelium
69
limb
55
blood
55
bodily fluid
53
eye
33
musculature of body
30
embryo
30
nerve
20
lung
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
126
AMP
Genome assembly (visualization)
122
GRCh38
87
hg19
Lab
126
AMP-T2D consortium
audit.ERROR.category!
inconsistent replicate
biosample_type!
primary cell
files.file_type!
bed broadPeak
target.investigated_as!
control
BIOSAMPLE
ASSAY
126 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
4
tissue
coronary artery
1
36
3
tibial artery
1
1
18
pulmonary artery
2
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