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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
163
DNase-seq
4
ATAC-seq
2
Capture-C
1
pCHi-C
1
snATAC-seq
Assay category
168
DNA accessibility
Date released
159
June, 2019
4
February, 2023
4
October, 2019
2
August, 2021
1
February, 2021
1
May, 2022
Available data
2287
bam
2125
bigWig
1375
bed narrowPeak
1021
tsv
864
bigBed narrowPeak
fastq
279
tagAlign
252
bed broadPeak
229
bigBed broadPeak
207
bed bed3+
155
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
15
bedpe bed3+
13
hic
10
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
171
Homo sapiens
Biosample type
164
tissue
primary cell
6
in vitro differentiated cells
1
cell line
Organ
68
kidney
36
limb
33
musculature of body
27
heart
25
brain
18
ureter
7
connective tissue
pancreas
5
blood vessel
5
vasculature
4
artery
3
eye
2
nerve
1
adipose tissue
1
liver
Project
171
AMP
Genome assembly (visualization)
163
GRCh38
157
hg19
Lab
169
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
1
audit script error
audit.ERROR.category!
inconsistent replicate
biosample_type!
primary cell
files.file_type!
fastq
organ_slims!
pancreas
BIOSAMPLE
ASSAY
171 results
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DNase-seq
ATAC-seq
Capture-C
pCHi-C
snATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 35 more…
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
cell line
HepG2
1
See all biosamples
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