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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
736
ChIP-seq
117
total RNA-seq
29
ATAC-seq
11
DNase-seq
11
WGBS
6
single cell RNA-seq
5
GRO-seq
3
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
736
DNA binding
123
Transcription
42
DNA accessibility
14
DNA methylation
1
3D chromatin structure
Target of assay
449
transcription factor
149
control
133
histone modification
132
histone
84
RNA binding protein
82
recombinant protein
69
broad histone mark
62
narrow histone mark
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
303
November, 2017
222
August, 2017
94
December, 2017
87
November, 2018
58
October, 2018
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
9
October, 2017
6
April, 2018
6
September, 2017
5
January, 2018
2
July, 2018
1
August, 2018
1
March, 2019
Available data
2716
bam
2498
bigWig
1513
bed narrowPeak
1272
tsv
949
fastq
933
bigBed narrowPeak
tagAlign
273
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
73
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
7
bed bedgraph
6
bed bed3
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
922
Homo sapiens
Biosample type
415
cell line
primary cell
362
tissue
141
in vitro differentiated cells
4
stem cell
Organ
453
liver
206
pancreas
98
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
19
epithelium
4
brain
2
musculature of body
Project
922
AMP
Genome assembly (visualization)
758
hg19
701
GRCh38
5
hg18
Lab
896
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
28
inconsistent control
4
inconsistent ontology term
Audit category:
41
missing controlled_by
Audit category:
40
inconsistent control read length
8
inconsistent control run_type
audit.ERROR.category!
inconsistent replicate
biosample_type!
primary cell
files.file_type!
tagAlign
organ_slims!
bone element
BIOSAMPLE
ASSAY
922 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
cell line
HepG2
348
5
1
1
GM12878
60
tissue
islet of Langerhans
28
97
20
1
6
1
liver
67
2
1
1
body of pancreas
33
4
2
2
spleen
20
1
1
2
omental fat pad
11
1
1
+ See 8 more…
in vitro differentiated cells
adipocyte
53
1
pancreatic endoderm
18
4
1
hepatocyte
15
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
+ See 7 more…
stem cell
hESC
3
1
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