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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
45
ATAC-seq
29
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
56
Transcription
49
DNA accessibility
29
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
transcription factor
1
RNA binding protein
Date released
62
February, 2021
35
February, 2023
26
October, 2019
4
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
July, 2019
Available data
95
bam
78
bigWig
69
bed narrowPeak
56
tsv
24
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
tagAlign
Organism
134
Homo sapiens
Biosample type
72
tissue
62
cell line
primary cell
Organ
606
connective tissue
581
pancreas
472
adipose tissue
438
liver
364
heart
310
kidney
265
brain
192
blood vessel
192
vasculature
158
bone element
134
artery
122
limb
114
epithelium
82
musculature of body
56
eye
43
nerve
34
embryo
20
lung
19
spleen
ureter
16
skeleton
10
blood
10
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
134
AMP
Genome assembly (visualization)
121
GRCh38
86
hg19
Lab
134
AMP-T2D consortium
audit.ERROR.category!
inconsistent replicate
biosample_type!
primary cell
organ_slims!
ureter
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
134 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
4
2
tibial artery
1
1
23
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
2
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