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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
60
ChIP-seq
13
ATAC-seq
1
RRBS
Assay category
62
Transcription
60
DNA binding
13
DNA accessibility
1
DNA methylation
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
150
February, 2021
27
December, 2018
18
January, 2019
15
November, 2018
8
February, 2023
1
January, 2018
1
July, 2019
Available data
126
bam
113
bigWig
88
txt
62
bed narrowPeak
60
fastq
58
tsv
54
bigBed narrowPeak
4
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
220
Homo sapiens
Biosample type
159
tissue
61
cell line
primary cell
Organ
776
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
220
AMP
Genome assembly (visualization)
126
hg19
120
GRCh38
Lab
220
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
1
inconsistent control
audit.ERROR.category!
inconsistent replicate
biosample_type!
primary cell
BIOSAMPLE
ASSAY
220 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
RRBS
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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cell line
GM12878
60
1
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