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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
469
total RNA-seq
176
ChIP-seq
24
ATAC-seq
6
WGBS
5
DNase-seq
3
pCHi-C
2
Capture-C
2
small RNA-seq
1
RNA microarray
Assay category
471
Transcription
176
DNA binding
29
DNA accessibility
6
DNA methylation
Target of assay
94
histone
94
histone modification
56
broad histone mark
43
control
39
transcription factor
37
narrow histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
452
February, 2021
125
August, 2017
46
October, 2019
23
October, 2018
14
February, 2023
10
July, 2019
5
August, 2021
3
February, 2020
2
March, 2020
1
August, 2018
1
January, 2018
1
June, 2019
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
599
bam
569
bigWig
468
tsv
98
fastq
85
bed narrowPeak
39
bigBed narrowPeak
22
tagAlign
21
bed bed3+
6
bed broadPeak
5
bed bed3
5
bigBed broadPeak
4
bed bedgraph
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
687
Homo sapiens
Biosample type
590
tissue
97
in vitro differentiated cells
primary cell
1
stem cell
Organ
776
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
688
AMP
Genome assembly (visualization)
586
hg19
565
GRCh38
Lab
684
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
audit.ERROR.category!
inconsistent replicate
biosample_type!
primary cell
organ_slims!
ureter
BIOSAMPLE
ASSAY
688 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
Capture-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
tibial nerve
5
35
1
2
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
+ See 5 more…
in vitro differentiated cells
adipocyte
5
67
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
stem cell
mesenchymal stem cell
1
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