Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
snATAC-seq
12
ATAC-seq
12
single cell RNA-seq
6
WGBS
3
ChIP-seq
2
pCHi-C
Assay category
39
DNA accessibility
12
Transcription
6
DNA methylation
3
DNA binding
Target of assay
3
control
Date released
134
May, 2022
107
February, 2023
94
May, 2021
62
February, 2021
58
May, 2020
56
September, 2020
47
November, 2017
43
August, 2021
33
August, 2017
25
October, 2019
11
March, 2020
9
December, 2017
9
July, 2019
9
November, 2019
8
February, 2018
8
January, 2021
8
June, 2019
7
November, 2020
5
November, 2018
4
October, 2022
3
January, 2019
3
March, 2023
2
December, 2019
1
August, 2018
1
December, 2018
1
May, 2019
1
September, 2018
Available data
119
bam
bigWig
107
tsv
45
fastq
14
bed narrowPeak
8
tagAlign
4
bed bedgraph
2
bed bed3+
1
bed bed3
Organism
62
Homo sapiens
Biosample type
tissue
46
primary cell
12
cell line
4
in vitro differentiated cells
Organ
10
artery
10
blood vessel
10
heart
10
vasculature
6
epithelium
6
pancreas
5
connective tissue
1
liver
Project
45
HPAP
17
AMP
Genome assembly (visualization)
14
hg19
8
GRCh38
Lab
45
Klaus Kaestner, Upenn
17
AMP-T2D consortium
Audit category:
27
audit script error
inconsistent replicate
audit.ERROR.category!
inconsistent replicate
biosample_type!
stem cell
tissue
files.file_type!
bigWig
BIOSAMPLE
ASSAY
62 results
search-icon
table-tab-icon
Clear Filters
snATAC-seq
ATAC-seq
single cell RNA-seq
WGBS
ChIP-seq
pCHi-C
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
cell line
smooth muscle cell of the coronary artery
8
2
HepG2
1
iPSC derived cell line
1
in vitro differentiated cells
adipocyte
4
Download