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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
357
ChIP-seq
Assay category
357
DNA binding
Target of assay
357
transcription factor
89
recombinant protein
81
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
241
November, 2017
57
November, 2018
25
December, 2018
14
January, 2019
11
August, 2021
7
October, 2019
1
February, 2021
1
November, 2019
Available data
352
bigWig
348
bed narrowPeak
345
bam
337
fastq
328
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
3
tar
1
tagAlign
Organism
357
Homo sapiens
Biosample type
357
cell line
91
tissue
49
in vitro differentiated cells
9
primary cell
Organ
297
liver
51
blood
51
bodily fluid
7
kidney
4
artery
blood vessel
4
heart
4
vasculature
1
epithelium
1
pancreas
Project
357
AMP
Genome assembly (visualization)
348
hg19
305
GRCh38
Lab
346
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
audit.ERROR.category!
inconsistent replicate
files.file_type!
zippedFastqFolder
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
357 results
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ChIP-seq
cell line
HepG2
297
GM12878
51
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
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