Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
437
ChIP-seq
80
total RNA-seq
9
ATAC-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Hi-C
2
HiChIP
1
DNase-seq
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
437
DNA binding
82
Transcription
10
DNA accessibility
2
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
360
transcription factor
89
recombinant protein
72
control
64
RNA binding protein
30
chromatin remodeller
19
histone
histone modification
narrow histone mark
9
broad histone mark
2
other context
2
other post-translational modification
Date released
300
November, 2017
69
February, 2021
61
November, 2018
39
August, 2021
28
December, 2018
22
January, 2019
15
October, 2019
6
March, 2020
5
February, 2023
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
502
bam
447
bigWig
411
fastq
365
bed narrowPeak
334
bigBed narrowPeak
85
tsv
44
bed broadPeak
44
bigBed broadPeak
9
tagAlign
3
tar
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
txt
1
vcf
Organism
547
Homo sapiens
Biosample type
1717
tissue
563
primary cell
550
cell line
280
in vitro differentiated cells
8
stem cell
Organ
382
liver
pancreas
67
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
60
blood
60
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
543
AMP
5
T1D
2
community
Genome assembly (visualization)
452
hg19
394
GRCh38
Lab
512
AMP-T2D consortium
31
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
16
inconsistent ontology term
1
inconsistent control
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
audit.ERROR.category!
inconsistent replicate
organ_slims!
pancreas
target.investigated_as!
histone modification
narrow histone mark
BIOSAMPLE
ASSAY
550 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
DNase-seq
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
360
14
2
2
2
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
59
1
H1-hESC
8
EndoC_BH1
3
2
+ See 13 more…
See all biosamples
Download