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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ChIP-seq
129
total RNA-seq
32
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
139
DNA binding
131
Transcription
33
DNA accessibility
4
3D chromatin structure
Target of assay
77
histone
77
histone modification
39
broad histone mark
37
narrow histone mark
34
transcription factor
28
control
4
RNA binding protein
2
chromatin remodeller
Date released
80
May, 2021
68
August, 2017
39
February, 2018
38
August, 2021
26
February, 2021
24
December, 2017
13
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
267
bam
229
bigWig
129
tsv
122
fastq
110
bed narrowPeak
37
tagAlign
23
bed bed3+
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
3
bigBed narrowPeak
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
316
Homo sapiens
Biosample type
2247
tissue
541
cell line
316
in vitro differentiated cells
235
primary cell
8
stem cell
Organ
93
connective tissue
29
embryo
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
316
AMP
Genome assembly (visualization)
265
hg19
245
GRCh38
4
hg18
Lab
316
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
109
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
audit.ERROR.category!
inconsistent replicate
month_released!
June, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
316 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
7
1
cardiomyocytes
3
59
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
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