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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
Hi-C
1
ATAC-seq
Assay category
3
3D chromatin structure
1
DNA accessibility
Date released
3
October, 2022
1
February, 2021
Available data
610
bigWig
606
bam
406
fastq
295
bed narrowPeak
267
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
4
Homo sapiens
Biosample type
5
in vitro differentiated cells
5
tissue
4
primary cell
Organ
3
epithelium
3
pancreas
1
connective tissue
Project
3
HPAP
1
AMP
Genome assembly (visualization)
4
hg19
1
GRCh38
Lab
3
Klaus Kaestner, Upenn
1
AMP-T2D consortium
Audit category:
3
audit script error
audit.ERROR.category!
inconsistent replicate
month_released!
June, 2018
BIOSAMPLE
ASSAY
4 results
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Hi-C
ATAC-seq
primary cell
osteoblast
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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