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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
total RNA-seq
30
single cell RNA-seq
12
ATAC-seq
2
small RNA-seq
Assay category
142
Transcription
12
DNA accessibility
Target of assay
3
control
Date released
52
May, 2021
45
May, 2020
15
July, 2018
13
July, 2019
12
February, 2023
10
April, 2018
4
November, 2020
2
June, 2018
1
February, 2021
Available data
382
bigWig
367
bam
189
bed narrowPeak
171
fastq
154
tsv
96
tagAlign
73
zippedFastqFolder
48
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
16
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
154
Homo sapiens
Biosample type
1073
tissue
154
primary cell
129
in vitro differentiated cells
84
cell line
4
stem cell
Organ
epithelium
108
pancreas
15
connective tissue
6
kidney
5
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
96
T1D
58
AMP
Genome assembly (visualization)
142
GRCh38
142
hg19
Lab
96
Kyle Gaulton, UCSD
58
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
audit.ERROR.category!
inconsistent replicate
organ_slims!
epithelium
BIOSAMPLE
ASSAY
154 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
small RNA-seq
primary cell
monocyte
53
pancreatic cell
7
mesenchymal cell
6
osteoblast
5
pancreatic stellate cell
4
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