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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
single cell RNA-seq
50
total RNA-seq
11
ATAC-seq
7
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
115
Transcription
17
DNA accessibility
7
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
6
control
1
RNA binding protein
1
transcription factor
Date released
64
August, 2021
47
September, 2023
14
May, 2023
8
February, 2021
5
April, 2019
3
December, 2019
3
July, 2019
2
October, 2019
Available data
bed narrowPeak
98
bam
91
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
12
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
146
Homo sapiens
Biosample type
146
tissue
14
primary cell
11
cell line
Organ
534
connective tissue
475
adipose tissue
382
pancreas
248
liver
150
bone element
146
kidney
140
heart
73
brain
33
blood vessel
33
vasculature
31
musculature of body
30
limb
26
eye
20
lung
16
nerve
11
artery
11
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
99
AMP
47
KPMP
Genome assembly (visualization)
13
GRCh38
4
hg19
Lab
78
Katalin Susztak, Upenn
47
KPMP
21
AMP-T2D consortium
Audit category:
7
audit script error
audit.ERROR.category!
inconsistent replicate
files.file_type!
bed narrowPeak
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
146 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
Hi-C
RRBS
small RNA-seq
tissue
kidney
64
49
11
7
6
1
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
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