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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
6
WGBS
1
ATAC-seq
1
RNA microarray
1
pCHi-C
1
total RNA-seq
Assay category
66
DNA binding
6
DNA methylation
1
DNA accessibility
1
Transcription
Target of assay
30
histone
30
histone modification
24
control
20
broad histone mark
12
transcription factor
10
narrow histone mark
Date released
54
August, 2017
18
October, 2018
1
August, 2018
1
August, 2021
January, 2018
1
May, 2023
1
October, 2019
Available data
442
bam
424
bigWig
tsv
44
fastq
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
75
Homo sapiens
Biosample type
75
tissue
1
in vitro differentiated cells
Organ
315
pancreas
217
epithelium
176
liver
147
kidney
130
connective tissue
93
bone element
76
adipose tissue
57
brain
35
vasculature
34
heart
33
blood vessel
26
musculature of body
23
eye
23
limb
19
lung
14
blood
14
bodily fluid
11
nerve
10
spleen
9
artery
9
vein
8
embryo
8
skeleton
4
gonad
4
ovary
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
76
AMP
Genome assembly (visualization)
15
GRCh38
14
hg19
Lab
76
AMP-T2D consortium
Audit category:
12
missing controlled_by
audit.ERROR.category!
inconsistent replicate
files.file_type!
bed narrowPeak
tsv
month_released!
January, 2018
BIOSAMPLE
ASSAY
76 results
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ChIP-seq
WGBS
ATAC-seq
RNA microarray
pCHi-C
total RNA-seq
tissue
subcutaneous abdominal adipose tissue
35
3
white adipose tissue
12
subcutaneous adipose tissue
10
1
omental fat pad
8
adipose tissue
1
3
1
1
in vitro differentiated cells
white fat cell
1
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