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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
38
ChIP-seq
4
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
Assay category
398
Transcription
38
DNA binding
6
DNA accessibility
2
DNA methylation
Target of assay
19
control
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
23
October, 2018
18
August, 2017
12
July, 2019
1
February, 2023
1
June, 2019
1
November, 2018
1
November, 2019
1
October, 2017
Available data
442
bam
425
bigWig
401
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
444
Homo sapiens
Biosample type
442
tissue
2
primary cell
Organ
711
liver
695
pancreas
597
connective tissue
444
adipose tissue
328
epithelium
287
heart
244
brain
219
vasculature
214
blood vessel
208
kidney
137
artery
114
limb
70
musculature of body
66
bone element
60
blood
60
bodily fluid
42
nerve
36
embryo
34
eye
24
spleen
19
vein
18
ureter
8
skeleton
1
pericardium
1
pituitary gland
Project
444
AMP
Genome assembly (visualization)
423
GRCh38
423
hg19
Lab
444
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
audit.ERROR.category!
inconsistent replicate
files.file_type!
tar
BIOSAMPLE
ASSAY
444 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
tissue
adipose tissue
381
2
1
2
subcutaneous adipose tissue
6
12
1
1
omental fat pad
4
11
1
1
2
white adipose tissue
12
visceral abdominal adipose tissue
3
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
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