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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
5
Hi-C
5
single cell RNA-seq
4
total RNA-seq
1
MPRA
1
snATAC-seq
Assay category
9
Transcription
5
3D chromatin structure
1
DNA accessibility
Date released
89
February, 2021
4
February, 2023
4
July, 2019
1
May, 2022
1
October, 2019
1
October, 2022
Available data
3186
bam
2859
bigWig
1542
bed narrowPeak
1488
tsv
1163
fastq
1042
bigBed narrowPeak
320
bed broadPeak
314
tagAlign
285
bigBed broadPeak
269
bed bed3+
95
txt
36
bed bedMethyl
36
bigBed bedMethyl
18
bedpe bed3+
16
hic
11
bed bed3
8
csv
5
hdf5
4
bed bedgraph
4
tar
2
ibed
1
tagAlign bed3+
Organism
99
Homo sapiens
Biosample type
94
tissue
4
primary cell
2
cell line
Organ
88
bone element
5
kidney
4
skeleton
3
brain
2
blood vessel
2
epithelium
2
vasculature
1
connective tissue
1
liver
1
musculature of body
1
pancreas
Project
100
AMP
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
100
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
84
inconsistent ontology term
6
audit script error
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent replicate
BIOSAMPLE
ASSAY
100 results
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RNA microarray
Hi-C
single cell RNA-seq
total RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
5
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
MIN6
1
Panc1
1
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