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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
ChIP-seq
Assay category
389
DNA binding
Target of assay
320
histone
320
histone modification
173
narrow histone mark
147
broad histone mark
65
control
4
transcription factor
Date released
90
May, 2021
85
August, 2017
78
November, 2017
50
May, 2020
48
October, 2019
24
August, 2021
14
October, 2017
February, 2021
Available data
2819
bam
2617
bigWig
1793
bed narrowPeak
1313
fastq
1042
bigBed narrowPeak
1041
tsv
389
tagAlign
322
bed broadPeak
285
bigBed broadPeak
271
bed bed3+
153
zippedFastqFolder
72
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
10
bed bed3
5
hdf5
4
tar
3
bed bedgraph
3
cool
2
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
382
Homo sapiens
Biosample type
237
tissue
100
primary cell
40
in vitro differentiated cells
12
cell line
Organ
118
brain
86
liver
22
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
7
epithelium
pituitary gland
Project
305
AMP
84
T1D
Genome assembly (visualization)
240
GRCh38
232
hg19
Lab
305
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
audit.ERROR.category!
inconsistent replicate
lab.title!
Anna Gloyn, Oxford
month_released!
February, 2021
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
389 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 42 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
12
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