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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
total RNA-seq
6
single cell RNA-seq
2
pCHi-C
2
small RNA-seq
Assay category
19
Transcription
Date released
7
July, 2019
6
August, 2021
5
March, 2020
3
February, 2020
Available data
161
bam
154
bigWig
136
bed narrowPeak
121
bigBed narrowPeak
57
bed broadPeak
44
bigBed broadPeak
43
bed bed3+
21
tsv
15
tagAlign
5
bed bedMethyl
5
bigBed bedMethyl
5
fastq
5
hic
4
bedpe bed3+
2
hdf5
1
tar
1
txt
Organism
21
Homo sapiens
Biosample type
19
tissue
2
primary cell
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
21
AMP
Genome assembly (visualization)
10
GRCh38
10
hg19
Lab
21
AMP-T2D consortium
audit.ERROR.category!
inconsistent replicate
organ_slims!
heart
BIOSAMPLE
ASSAY
21 results
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total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
tissue
aorta
1
4
1
psoas muscle
2
1
ascending aorta
2
pulmonary artery
2
skeletal muscle tissue
1
1
+ See 3 more…
primary cell
skeletal muscle satellite cell
1
1
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