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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
total RNA-seq
120
ChIP-seq
82
single cell RNA-seq
77
ATAC-seq
41
WGBS
22
snATAC-seq
Assay category
228
Transcription
120
DNA binding
99
DNA accessibility
41
DNA methylation
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
23
control
5
RNA binding protein
5
transcription factor
Date released
714
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2023
Available data
308
bam
281
bigWig
164
tsv
135
bed narrowPeak
134
zippedFastqFolder
97
bigBed narrowPeak
74
fastq
7
txt
1
bed bed3+
Organism
488
Homo sapiens
Biosample type
301
tissue
187
primary cell
Organ
263
pancreas
118
epithelium
50
blood vessel
50
vasculature
40
liver
28
brain
21
heart
9
musculature of body
7
limb
5
artery
5
kidney
2
connective tissue
Project
354
AMP
134
HPAP
Genome assembly (visualization)
300
hg19
260
GRCh38
Lab
290
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
1
audit script error
audit.ERROR.category!
inconsistent replicate
lab.title!
Anna Gloyn, Oxford
BIOSAMPLE
ASSAY
488 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
tissue
islet of Langerhans
126
18
liver
20
20
ascending aorta
16
thoracic aorta
16
temporal lobe
15
+ See 9 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
7
22
25
pancreatic beta cell
9
13
16
pancreatic acinar cell
5
4
kidney epithelial cell
5
+ See 12 more…
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