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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
ChIP-seq
89
total RNA-seq
6
RRBS
4
ATAC-seq
4
DNase-seq
3
WGBS
1
FAIRE-seq
Assay category
179
DNA binding
89
Transcription
9
DNA accessibility
9
DNA methylation
Target of assay
130
histone modification
129
histone
69
broad histone mark
60
narrow histone mark
36
control
13
transcription factor
4
RNA binding protein
1
chromatin remodeller
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
286
August, 2017
259
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
3
March, 2019
1
August, 2022
Available data
215
fastq
211
bam
207
bigWig
96
bed narrowPeak
89
tsv
63
tagAlign
39
bed broadPeak
39
bigBed narrowPeak
22
bed bed3+
14
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
279
Homo sapiens
Biosample type
227
tissue
59
primary cell
Organ
188
pancreas
connective tissue
57
adipose tissue
54
liver
29
epithelium
26
musculature of body
Project
286
AMP
Genome assembly (visualization)
212
hg19
184
GRCh38
Lab
286
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent replicate
lab.title!
Mark McCarthy, Oxford
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
286 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
48
1
3
skeletal muscle tissue
22
4
pancreas
14
right lobe of liver
1
1
primary cell
skeletal muscle myoblast
15
1
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
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